McBryan's Musings

Computational Biology, Bioinformatics and Other Things

Tuesday, 18 March 2014

Fixing an Overheating USB Hub

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So I've had a Belkin F5U237v1 USB 2.0 7-port powered hub for quite some time.  It's a pretty nice little hub to have; I especially ...
Monday, 25 November 2013

Cellular Senescence and Genome Wide Methylation Analysis

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Recently we conducted a study into the pattern of methylation within senescent cells. Senescence Senescence is the permanent halt of pro...
1 comment:
Friday, 1 November 2013

What is a replicate anyway?

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In science we perform replication as the primary way of ensuring reproducibility. This is one of the key principles. Science only advances...
Tuesday, 16 July 2013

The G Test and Bisulphite Sequencing DMRs

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This is Part 4 in a series on Bisulphite Sequencing. You can return to Part 3 (Bisulphite Sequencing Simple Visualisation) . Okay, so we...
Tuesday, 9 July 2013

The G-Test and Python

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The G-Test is a statistical test which can be used much like a chi-squared test. It is defined as: $$$$ G = 2 \sum_{i=0}^{r} \sum_{j=0}^{...
5 comments:
Monday, 8 July 2013

Bisulphite Sequencing Simple Visualisation (Multiple Samples)

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This is Part 3 in a series on Bisulphite Sequencing. You can return to Part 2 (Using the Binomial Distribution in Bisulphite Sequencing) . ...
Wednesday, 19 June 2013

qPCR normalisation

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This post will discuss the normalisation of qPCR results using both the Delta Delta CT (Livak) and Standard Curve (Pfaffl) methods as applie...
82 comments:
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